Consulate warns that violating local regulations could lead to cancellation of employment contract and Permit to Stay.
Flight included children, expectant mothers and two dozen sick, but officials in Manila say many more are still stranded in Macao.
The University of Macau (UM) said that it has launched a health programme in conjunction with Caritas Macau for overseas Filipino workers.
Over 300 Filipinos nationals returned to Manila on Thursday via a chartered flight organised by the Philippine Consulate General in Macao.
Discussions with concerned airlines to airlift stranded Filipinos in Macau has met a setback.
The Philippines partially lifted a travel ban on Macau and Hong Kong on Tuesday.
Philippine nationals stranded in Macau will be able to return to their home country on special Philippine Airlines flights next week.